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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13199557_13199684_F

Intron Information:

Intron Rank:
144198
Intron Class:
major
Intron Phase:
Intron Coordinates:
13199557 - 13199684
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTAATCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATGTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.7
0.53
0.8
70.6
35.8
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
51
0.03
2.2
73.42
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027752
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048383
13198951 - 13204071
5121