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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13267_14679_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13267 - 14679
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CACTGCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACAC
Flanking Amino Acid:
SADLKMKSSTPFCGVQDGKL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
62.8
0.29
1
55.2
38.9
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
54.9
0.13
1.7
66.43
39.7

Associated Gene:

Gene:
OVCH2
Ensembl Gene ID:
ENSAPLG00000004207
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004323
10484 - 20591
10108