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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13364154_13373636_F

Intron Information:

Intron Rank:
129977
Intron Class:
major
Intron Phase:
Intron Coordinates:
13364154 - 13373636
Intron Length:
9483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTTTCCACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
63.3
0.41
1.9
78.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019940
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044726
13364093 - 13374819
10727