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Intron Name: Anas_platyrhynchos_platyrhynchos_13_13435569_13437504_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13435569 - 13437504

Intron Length:

1936

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAATAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

ATTTTTGGAAAG

Flanking Amino Acid:

SIKDEIFGEYSDSDEKPLKG

Intron Amino Acid Position:

1113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

75.1

41.1

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

84.8

0.78

0.7

80.6

31.4

Minor 5ss

34.5

-1.8

2.8

42.5

44.3

Minor BPS

44.4

-0.5

2.1

55.21

40.2

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787

ENSAPLT00000007294

13435352 - 13488662

53311

ENSAPLT00000044302

13434203 - 13514592

80390

ENSAPLT00000043345

13434534 - 13494505

59972