Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13446573_13447579_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13446573 - 13447579

Intron Length:

1007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTATGTGCT

5'SS Class:

major

3'SS Sequence:

CTTTCTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAC

U12 Branch Point Sequence:

CTGACCTCACTT

Flanking Amino Acid:

LTGYILQYQIINETHEIGPL

Intron Amino Acid Position:

972

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

74.3

34.2

Major BPS

72.6

0.56

0.9

63.1

35.8

Major PPT

90.4

0.91

0.6

88.5

Minor 5ss

43.1

-0.8

3.1

39.8

Minor BPS

-0

1.9

64.5

46.2

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043345

13434534 - 13494505

59972

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787

ENSAPLT00000044302

13434203 - 13514592

80390