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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13446573_13447942_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13446573 - 13447942
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CTGACCTCACTT
Flanking Amino Acid:
SPVVFETPEGVNETHEIGPL
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
48
-0
1.9
64.5
46.2

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007294
13435352 - 13488662
53311