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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13447703_13447942_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13447703 - 13447942
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTATCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TCTCTGTGAACT
Flanking Amino Acid:
SPVVFETPEGVPEQPRFLKI
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.3
0.61
0.9
73.5
36
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
49.7
0.06
2.2
73.74
43.1

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000044302
13434203 - 13514592
80390
ENSAPLT00000043345
13434534 - 13494505
59972
ENSAPLT00000032414
13434534 - 13494505
59972