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Intron Name: Anas_platyrhynchos_platyrhynchos_13_13448424_13450648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13448424 - 13450648

Intron Length:

2225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

CCTGTTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GCATCTTTAATA

Flanking Amino Acid:

NVTTGYSGEDTPDAAPSGVS

Intron Amino Acid Position:

824

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

76.9

31.6

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

84.8

0.78

0.8

78.9

33.1

Minor 5ss

37.9

-1.4

2.7

47.4

36.1

Minor BPS

70.1

0.63

1.2

68.59

38.2

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787

ENSAPLT00000007294

13435352 - 13488662

53311

ENSAPLT00000044302

13434203 - 13514592

80390

ENSAPLT00000043345

13434534 - 13494505

59972