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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13450872_13453471_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13450872 - 13453471
Intron Length:
2600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TGTTCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTCTTTTAACA
Flanking Amino Acid:
EPNEMVMKWEPLKPTERNGP
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79
0.65
0.8
73
32
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
72.5
0.7
1.2
75.92
35.5

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032414
13434534 - 13494505
59972
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000007294
13435352 - 13488662
53311
ENSAPLT00000044302
13434203 - 13514592
80390
ENSAPLT00000043345
13434534 - 13494505
59972