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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13453543_13454545_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13453543 - 13454545
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACACT
5'SS Class:
major
3'SS Sequence:
TGTGTGGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CTAACCTTATTA
Flanking Amino Acid:
PSLRYATPPAAPDKNPENIR
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.4
39.6
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
71.8
0.49
1.1
61.5
48.6
Minor 5ss
41.5
-0.9
3
55.5
43
Minor BPS
57.4
0.23
1.7
64.84
41.8

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032414
13434534 - 13494505
59972
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000007294
13435352 - 13488662
53311
ENSAPLT00000044302
13434203 - 13514592
80390
ENSAPLT00000043345
13434534 - 13494505
59972