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Intron Name: Anas_platyrhynchos_platyrhynchos_13_13454744_13454952_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13454744 - 13454952

Intron Length:

209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGAAGG

5'SS Class:

major

3'SS Sequence:

CTCTCCTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTTAT

U12 Branch Point Sequence:

TCTGCCTTATTT

Flanking Amino Acid:

AGASHNSPVNESIIEYEESQ

Intron Amino Acid Position:

660

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

60.8

43.6

Major BPS

61.1

0.28

1.3

53.6

43.8

Major PPT

77.6

0.62

0.7

71.8

26.3

Minor 5ss

39.1

-1.2

2.8

45.8

44.4

Minor BPS

64.7

0.54

1.7

79.24

43.6

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043345

13434534 - 13494505

59972

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787

ENSAPLT00000007294

13435352 - 13488662

53311

ENSAPLT00000044302

13434203 - 13514592

80390