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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13458499_13459299_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13458499 - 13459299
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGATCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTCTGTGATC
Flanking Amino Acid:
RAITANLDIRDATKIVITPK
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
65.1
0.34
1
56.3
44.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
60.3
0.31
2
76.89
33.8

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032414
13434534 - 13494505
59972
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000007294
13435352 - 13488662
53311
ENSAPLT00000044302
13434203 - 13514592
80390
ENSAPLT00000043345
13434534 - 13494505
59972