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Intron Name: Anas_platyrhynchos_platyrhynchos_13_13461736_13467386_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13461736 - 13467386

Intron Length:

5651

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGAGT

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCTCTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

GCTGTGTCACCT

Flanking Amino Acid:

TKHEFHVHVEEPPRWIKEPE

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

75.1

40.7

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

77.9

0.63

0.7

71.3

26.8

Minor 5ss

40.1

-1.1

3.2

57.4

46.9

Minor BPS

39.3

-0.7

2.3

55.64

46.7

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007294

13435352 - 13488662

53311

ENSAPLT00000044302

13434203 - 13514592

80390

ENSAPLT00000043345

13434534 - 13494505

59972

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787