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Intron Name: Anas_platyrhynchos_platyrhynchos_13_13473758_13474775_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13473758 - 13474775

Intron Length:

1018

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTGCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

GTATCATTACCA

Flanking Amino Acid:

PPLHIYWMNIDLQHIPQDER

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.8

83.2

28.5

Major BPS

76.9

0.67

66.3

40.4

Major PPT

81.4

0.71

0.9

77.7

36.7

Minor 5ss

36.2

-1.6

2.7

42.6

38.5

Minor BPS

57.6

0.24

1.9

70.6

Associated Gene:

Gene:

CHL1

Ensembl Gene ID:

ENSAPLG00000007000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032414

13434534 - 13494505

59972

ENSAPLT00000010019

13435352 - 13491138

55787

ENSAPLT00000007294

13435352 - 13488662

53311

ENSAPLT00000044302

13434203 - 13514592

80390

ENSAPLT00000043345

13434534 - 13494505

59972