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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13474899_13483491_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13474899 - 13483491
Intron Length:
8593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TGCTTTTTTACA
Flanking Amino Acid:
MSEEIELIVPSVPKFPKEKI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
34.4
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
88.2
0.86
0.7
83.2
32
Minor 5ss
33.6
-1.9
3.7
48.1
42
Minor BPS
58.4
0.26
1.6
66.98
39.5

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043345
13434534 - 13494505
59972
ENSAPLT00000032414
13434534 - 13494505
59972
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000007294
13435352 - 13488662
53311
ENSAPLT00000044302
13434203 - 13514592
80390