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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13486385_13488472_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13486385 - 13488472
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGGGATTTAATC
Flanking Amino Acid:
LAAAIEIPLSVAQLPTITEQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.6
0.71
0.9
80.2
37.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
49.1
-0
1.6
53.96
38.3

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010019
13435352 - 13491138
55787
ENSAPLT00000007294
13435352 - 13488662
53311
ENSAPLT00000043345
13434534 - 13494505
59972
ENSAPLT00000032414
13434534 - 13494505
59972