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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13488663_13490220_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13488663 - 13490220
Intron Length:
1558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAAC
5'SS Class:
major
3'SS Sequence:
TTCTCCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TGCAAGCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
63.4
43.1
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
74.2
0.54
0.9
69.5
36.8
Minor 5ss
44.1
-0.6
2.9
60.3
44.4
Minor BPS
39.7
-0.7
2.3
50.52
40.7

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010019
13435352 - 13491138
55787