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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13488663_13514070_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13488663 - 13514070
Intron Length:
25408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGAAAT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TGCAAGCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
73.4
37.3
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
74.2
0.54
0.9
69.5
36.8
Minor 5ss
36.6
-1.5
2.9
49
46.8
Minor BPS
39.7
-0.7
2.3
50.52
40.7

Associated Gene:

Gene:
CHL1
Ensembl Gene ID:
ENSAPLG00000007000
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044302
13434203 - 13514592
80390