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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13598625_13623129_R

Intron Information:

Intron Rank:
149448
Intron Class:
major
Intron Phase:
Intron Coordinates:
13598625 - 13623129
Intron Length:
24505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TACCTGGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
61.3
45.8
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
35.7
-1.6
3.2
38.2
46.7
Minor BPS
39.2
-0.7
2.5
58.77
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027899
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033998
13587086 - 13623350
36265