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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13636787_13637949_R

Intron Information:

Intron Rank:
150840
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13636787 - 13637949
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCAAGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
51.6
0.04
1.2
51
41.9
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
67.1
0.62
1.6
84.21
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028641
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041385
13636782 - 13640385
3604