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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13640464_13654508_R

Intron Information:

Intron Rank:
150833
Intron Class:
major
Intron Phase:
Intron Coordinates:
13640464 - 13654508
Intron Length:
14045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAAGTAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1
63
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.9
0.63
0.8
78.8
28.4
Minor 5ss
30.1
-2.3
3.3
33.9
44.2
Minor BPS
73.9
0.84
1.7
88.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028641
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017771
13638094 - 13654553
16460
ENSAPLT00000038291
13639439 - 13654553
15115