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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13656020_13657791_F

Intron Information:

Intron Rank:
149278
Intron Class:
major
Intron Phase:
Intron Coordinates:
13656020 - 13657791
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
TTATCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGATCTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.4
0.71
0.8
78.6
34.3
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
65.4
0.46
1.6
72
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030274
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028245
13655867 - 13657833
1967