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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13820424_13830740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13820424 - 13830740
Intron Length:
10317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCGT
5'SS Class:
major
3'SS Sequence:
ATTCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTCTCTTAACA
Flanking Amino Acid:
STHASHIPHRRLNLAYRRLN
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.2
43.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.3
0.64
0.9
73.9
34.8
Minor 5ss
42.1
-0.9
2.8
59.6
44.7
Minor BPS
79.5
0.92
1.1
83.19
30.2

Associated Gene:

Gene:
CNTN3
Ensembl Gene ID:
ENSAPLG00000009693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010136
13820018 - 13904341
84324