Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13868787_13877544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13868787 - 13877544

Intron Length:

8758

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGAAAC

5'SS Class:

major

3'SS Sequence:

ATTTCATCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TGTATTTCATCT

Flanking Amino Acid:

NIARGRLTYYAKPHWIQTIK

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

67.8

37.5

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

81.2

0.7

0.8

74.8

34.4

Minor 5ss

32.5

-2

3.2

39.7

40.4

Minor BPS

48.5

-0

1.8

69.26

41.7

Associated Gene:

Gene:

CNTN3

Ensembl Gene ID:

ENSAPLG00000009693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040260

13810095 - 13904341

94247

ENSAPLT00000010136

13820018 - 13904341

84324