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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13890166_13893144_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13890166 - 13893144
Intron Length:
2979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATA
Flanking Amino Acid:
DASHFEKVGGSASGDLMIRN
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76
0.58
1
72.3
42.5
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
59.7
0.3
1.6
68.68
38.1

Associated Gene:

Gene:
CNTN3
Ensembl Gene ID:
ENSAPLG00000009693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040260
13810095 - 13904341
94247
ENSAPLT00000010136
13820018 - 13904341
84324