About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13893263_13894426_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13893263 - 13894426
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
VASAADLIVRGSPGPPEHVK
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
67.9
0.4
0.9
59.6
40.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
CNTN3
Ensembl Gene ID:
ENSAPLG00000009693
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040260
13810095 - 13904341
94247
ENSAPLT00000010136
13820018 - 13904341
84324