Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13895607_13896470_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13895607 - 13896470

Intron Length:

864

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

ACTTCTGTCACT

Flanking Amino Acid:

SRSELVITWDPIPEELQNGE

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

89.9

23.2

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

84.2

0.77

0.7

79.2

26.5

Minor 5ss

48.6

-0.1

2.8

71.8

38.1

Minor BPS

2.4

73.4

44.1

Associated Gene:

Gene:

CNTN3

Ensembl Gene ID:

ENSAPLG00000009693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040260

13810095 - 13904341

94247

ENSAPLT00000010136

13820018 - 13904341

84324