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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13907747_13908963_R

Intron Information:

Intron Rank:
137971
Intron Class:
major
Intron Phase:
Intron Coordinates:
13907747 - 13908963
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATGCTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.7
0.83
0.7
84.2
23.6
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
57.9
0.33
1.2
69.42
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028962
13907586 - 13911633
4048