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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_13909066_13911489_R

Intron Information:

Intron Rank:
137972
Intron Class:
major
Intron Phase:
Intron Coordinates:
13909066 - 13911489
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
100
1.24
0.5
100
0
Major PPT
65.2
0.34
1.1
63.3
41.9
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028962
13907586 - 13911633
4048