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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1398467_1403107_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1398467 - 1403107
Intron Length:
4641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCTTTCACA
Flanking Amino Acid:
LNEAFNTLNEFNHTGQGSIC
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.6
0.85
0.7
83.3
25.1
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
68.2
0.57
1.7
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012290
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027623
1244472 - 1422728
178257
ENSAPLT00000012856
1267770 - 1447585
179816