Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14017754_14022826_R

Intron Information:

Intron Rank:

144622

Intron Class:

major

Intron Phase:

Intron Coordinates:

14017754 - 14022826

Intron Length:

5073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATGC

5'SS Class:

strong_major

3'SS Sequence:

CATTCATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

CTGTCATTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

69.3

36.6

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

80.1

0.68

0.9

73.6

35.5

Minor 5ss

37.6

-1.4

3.2

50.9

45.7

Minor BPS

0.14

2.1

72.52

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031247

14017165 - 14023022

5858