About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14051105_14059528_F

Intron Information:

Intron Rank:
137321
Intron Class:
major
Intron Phase:
Intron Coordinates:
14051105 - 14059528
Intron Length:
8424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGATG
5'SS Class:
major
3'SS Sequence:
TTTCTTGCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.9
39.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
72.5
0.51
0.9
67.3
39.1
Minor 5ss
29.8
-2.3
3.3
38.7
46.6
Minor BPS
65.7
0.58
1.9
88.65
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033754
14050680 - 14061947
11268