About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14053425_14054401_R

Intron Information:

Intron Rank:
133015
Intron Class:
major
Intron Phase:
Intron Coordinates:
14053425 - 14054401
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCCTTCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
65.4
0.56
1.7
79.84
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018791
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034277
14047293 - 14054666
7374