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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14058501_14074802_R

Intron Information:

Intron Rank:
133684
Intron Class:
major
Intron Phase:
Intron Coordinates:
14058501 - 14074802
Intron Length:
16302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGTT
U12 Branch Point Sequence:
TCCCTGGTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
36.1
-0.8
4.3
65.3
43.7
Major PPT
69.7
0.44
0.9
63
37.2
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
35.8
-1.1
2.6
47.02
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032975
14057908 - 14081811
23904