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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14059650_14061934_F

Intron Information:

Intron Rank:
137322
Intron Class:
major
Intron Phase:
Intron Coordinates:
14059650 - 14061934
Intron Length:
2285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATGTTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.3
38.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
41.3
-1
2.5
47.3
42.8
Minor BPS
62.3
0.37
1.5
68.46
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033754
14050680 - 14061947
11268