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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14074884_14081603_R

Intron Information:

Intron Rank:
133685
Intron Class:
major
Intron Phase:
Intron Coordinates:
14074884 - 14081603
Intron Length:
6720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019181
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032975
14057908 - 14081811
23904