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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14151611_14156838_R

Intron Information:

Intron Rank:
148264
Intron Class:
major
Intron Phase:
Intron Coordinates:
14151611 - 14156838
Intron Length:
5228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACATT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTACTCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
75.3
40.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
43.6
-0.7
3.3
66.1
45
Minor BPS
58.2
0.34
1.7
74.85
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027107
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019639
14151525 - 14173745
22221