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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14203447_14204206_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14203447 - 14204206
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
EDDIGIYVSEIDPNSIAAKD
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.9
0.78
0.7
80.8
30.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
PDZRN3
Ensembl Gene ID:
ENSAPLG00000014073
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014673
14180850 - 14209723
28874