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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14205146_14206231_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14205146 - 14206231
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
CTTTTTCACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCCTTTTTCACA
Flanking Amino Acid:
SLLVARPEIQLDEGWMDDDR
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.7
0.6
0.8
73.2
30.7
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
56.4
0.19
1.7
65.59
41.9

Associated Gene:

Gene:
PDZRN3
Ensembl Gene ID:
ENSAPLG00000014073
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014673
14180850 - 14209723
28874