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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14251111_14267605_R

Intron Information:

Intron Rank:
137321
Intron Class:
major
Intron Phase:
Intron Coordinates:
14251111 - 14267605
Intron Length:
16495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.3
0.68
0.9
76.7
37.4
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
60.6
0.33
1.8
75.53
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021377
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043872
14250870 - 14267642
16773