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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14276637_14276881_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14276637 - 14276881
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTTTATTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTTATTTAATA
Flanking Amino Acid:
MVVSCVYPSSEKNNSNSLNR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.7
0.6
0.9
73.6
35.4
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
69.2
0.6
1.4
75.77
36

Associated Gene:

Gene:
PPP4R2
Ensembl Gene ID:
ENSAPLG00000014045
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042257
14274147 - 14299540
25394
ENSAPLT00000023263
14274147 - 14299540
25394
ENSAPLT00000014636
14274147 - 14299781
25635