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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14278438_14283287_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14278438 - 14283287
Intron Length:
4850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TATTTCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTTATAAATC
Flanking Amino Acid:
RILKIVTGFNGIPFTIQRLC
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.8
78.5
34.2
Minor 5ss
41.7
-0.9
2.5
45.5
42.9
Minor BPS
51.7
0.03
1.9
66.54
39.7

Associated Gene:

Gene:
PPP4R2
Ensembl Gene ID:
ENSAPLG00000014045
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042257
14274147 - 14299540
25394
ENSAPLT00000023263
14274147 - 14299540
25394
ENSAPLT00000014636
14274147 - 14299781
25635