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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14283459_14299058_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14283459 - 14299058
Intron Length:
15600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TACCTCTTATTT
Flanking Amino Acid:
LCHVAKTGETMVQWSQFKGY
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.8
30.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
72.4
0.5
1
66.3
39.8
Minor 5ss
35.4
-1.7
3.3
48
41.4
Minor BPS
56.3
0.28
1.6
69.92
41.4

Associated Gene:

Gene:
PPP4R2
Ensembl Gene ID:
ENSAPLG00000014045
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042257
14274147 - 14299540
25394
ENSAPLT00000023263
14274147 - 14299540
25394
ENSAPLT00000014636
14274147 - 14299781
25635