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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14299141_14299747_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14299141 - 14299747
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGCCG
5'SS Class:
weak_major
3'SS Sequence:
CCCACGCCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCCATT
Flanking Amino Acid:
DVERLQEALKDFEKRGKKEV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
45.1
44.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
57.5
0.17
0.9
50
32.7
Minor 5ss
30.1
-2.3
3.4
39.4
46
Minor BPS
53.1
0.18
2
75.15
42.4

Associated Gene:

Gene:
PPP4R2
Ensembl Gene ID:
ENSAPLG00000014045
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014636
14274147 - 14299781
25635