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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14312858_14314049_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14312858 - 14314049
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AAACTAACAATT
Flanking Amino Acid:
FKALYEVIRDFPFEDNLFQS
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
82.4
0.73
0.7
81.3
23.9
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
40
-0.6
1.8
52.78
34.9

Associated Gene:

Gene:
GXYLT2
Ensembl Gene ID:
ENSAPLG00000013945
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014526
14311675 - 14326408
14734