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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14317535_14318570_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14317535 - 14318570
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAC
U12 Branch Point Sequence:
CCGGGATTAACC
Flanking Amino Acid:
LTRIRNTQFKNSMIPGGLTW
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
64.1
0.35
1.2
67.6
36.5
Major PPT
89.8
0.89
0.6
85.3
22.1
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
44.7
-0.4
2.1
50.47
46.4

Associated Gene:

Gene:
GXYLT2
Ensembl Gene ID:
ENSAPLG00000013945
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014526
14311675 - 14326408
14734