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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14340464_14341587_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14340464 - 14341587
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GCAATATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
GTTCCTTTGACC
Flanking Amino Acid:
RSAKHLVEEIGASAVLSEEE
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
62.6
0.28
1.1
55.1
43.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
71.7
0.67
1.2
76.2
33.6

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040120
14337637 - 14383206
45570
ENSAPLT00000029609
14339034 - 14383206
44173
ENSAPLT00000021856
14337637 - 14383206
45570
ENSAPLT00000014512
14337637 - 14383206
45570