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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14341743_14343070_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14341743 - 14343070
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGCA
5'SS Class:
major
3'SS Sequence:
GATGCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCACTCTTGATG
Flanking Amino Acid:
LRSGVFQRLQDELSDVVDVK
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.4
36.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.8
0.49
1
66.5
43.9
Minor 5ss
30.9
-2.2
3.4
41.1
45.4
Minor BPS
56
0.04
1.3
55.82
40

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029609
14339034 - 14383206
44173
ENSAPLT00000021856
14337637 - 14383206
45570
ENSAPLT00000014512
14337637 - 14383206
45570
ENSAPLT00000040120
14337637 - 14383206
45570