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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_14343184_14343453_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14343184 - 14343453
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
AGAAAGCTAACT
Flanking Amino Acid:
EAAKFDSDHYLADFFEDEAI
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
88.7
0.87
0.6
88.3
21.5
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
41
-0.6
2.3
59.26
42.8

Associated Gene:

Gene:
SHQ1
Ensembl Gene ID:
ENSAPLG00000013926
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029609
14339034 - 14383206
44173
ENSAPLT00000021856
14337637 - 14383206
45570
ENSAPLT00000014512
14337637 - 14383206
45570
ENSAPLT00000040120
14337637 - 14383206
45570