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Intron Name: Anas_platyrhynchos_platyrhynchos_13_14350719_14352489_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14350719 - 14352489

Intron Length:

1771

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CACTTAAAATCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTAGAT

U12 Branch Point Sequence:

CTCCACTTAAAA

Flanking Amino Acid:

DICVNEGEQNVESSWNVRKL

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

89.1

24.2

Major BPS

70.4

0.51

66.8

39.9

Major PPT

59.2

0.21

1.1

57.1

41.2

Minor 5ss

39.8

-1.1

2.9

41.5

Minor BPS

54.7

0.14

1.7

63.19

42.6

Associated Gene:

Gene:

SHQ1

Ensembl Gene ID:

ENSAPLG00000013926

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029609

14339034 - 14383206

44173

ENSAPLT00000021856

14337637 - 14383206

45570

ENSAPLT00000014512

14337637 - 14383206

45570